TIGR Rice Genome Annotation Home Page

TIGR Rice Genome Annotation Project Overview

What's New in the TIGR Rice Genome Annotation Project

Frequently Asked Questions (FAQ) about the TIGR Rice Resource

TIGR Rice Genome Annotation Project Publications

• TIGR Gene Nomenclature


• Rice Genome Browser


• Rice Genome Annotation Data Download


• TIGR Rice Genome Pseudomolecules


• Information about the TIGR rice genome pseudomolecules
• Plant GOSlim Assignment of Rice Proteins
• Generation of Paralogous Protein Families in Rice Genome


• Method for Construction of Paralogous Protein Families in the Rice Proteome


• Information about alternative spliced rice genes in TIGR rice genome pseudomolecules
• TIGR Rice Pseudomolecule Version Converter
• Redundant and Unmapped BAC/PAC Clones
• Information about the Centromeres in TIGR Rice Genome Pseudomolecules
• Pack-MULE Related Loci
• Putative SSRs in the TIGR Rice Pseudomolecules
• Organellar Insertions
• Segmental Duplication
• Obsolete Loci Search


• Whole Rice Genome Automated Annotation Database


• Search and convert TU name, model feat_name, and
  pub_locus from different versions of psuedomolecules
• Clone Table
• Clone Search
• Gene Name Search
• Sequence Search
• Locus Search
• Feat Name Search
• Pfam and Interpro Domain Search
• Motif Search
• tRNA Search
• TIGR's Annotation routine for automated annotation


• Rice Gene Expression


• Rice Gene Expression Anatomy Viewer and Digital Northern
• Information about expressed rice genes in TIGR rice genome pseudomolecules
• Rice Multiplatform Microarray Search
• Rice Transcript Assembly Reports
• Tissue Specific Expression in Rice


• TIGR Rice Sequencing and In Silico Mapping


• Rice BAC Sequencing at TIGR
• Status of the International Rice Genome Sequencing Project (IRGSP)
• Rice Genomic Sequencing Status
• In Silico Mapping of FSTs in the Rice Genome


• Maize Genetic Markers Mapped to Rice Pseudomolecules


• Display Maize Genetic Markers Mapped to Rice BAC/PAC Sequences
• Download Maize Genetic Markers Mapped to Rice BAC/PAC Sequences
• Maize-Rice Synteny Figure View


• Wheat Genetic Markers Mapped to Rice Pseudomolecules


• Display Wheat Genetic Markers Mapped to Rice BAC/PAC Sequences
• Download Wheat Genetic Markers Mapped to Rice BAC/PAC Sequences
• Wheat-Rice Synteny Figure View


• Sorghum Genetic Markers Mapped to Rice Pseudomolecules


• The TIGR Oryza Repeat Database


• The TIGR Oryza Repeat Database Background
• Methods to Create the TIGR Plant Repeat Databases
• Codes for Plant Repetitive Sequences
• TIGR Oryza Repeat Database References
• The TIGR Plant Repeat Databases


• TIGR Plant Transcript Assemblies Database

• Sequence (BLAST) Search
• Databases available for the BLAST search
• Oryza Gene Name Search
• Oryza Locus Search
• HMM Search
• Domain Dearch
• Motif Search
• GO Retrevial
• Search and convert TU name, model feat_name, and
  pub_locus from different versions of psuedomolecules
• Obsolete Loci Search
• Rice Genetic Markers

• Rice Genome Annotation Data Download
• Batch Rice Genome Annotation Data
• TIGR Rice Genome Annotation Databse
• TIGR Plant Repeat Database

• Training Opportunities
• Cereal Genomics Lab Module

• Rice Genbank Entries
• Rice Related Publications in PubMed:
• Rice Gene Statistics

Rice Links

Contact the TIGR Rice Genome Annotation Project

TIGR Home Page