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Maize Genetic Markers Mapped to Rice Pseudomolecules
 

The high-resolution maize genetic maps IBM2 2005 Neighbors and cIBM 2005 were obtained from MaizeGDB. Sequences of the markers were retrieved from GenBank and searched against the Rice pseudomolecules. Only markers that are at least 70% identical to the rice genome over 70% of their length, or that contain 150 bp aligning without gaps to the rice genome were taken into account.

  • cIBM 2005 map

    A total 1640 out of 3134 markers aligned to the TIGR Rice Pseudomolecules, Release 5. The 5 best alignments are displayed. Markers aligning to a unique position on the rice genome are denoted with a star (*).

  • IBM2 2005 Neighbors map

    A total of 16386 out of 42355 markers aligned to the TIGR Rice pseudomolecules, Release 5. Only the best alignment is displayed.


Enter a map to use and a maize or rice region of interest and retrieve all the alignments in that region.

Last updated: Jan. 08, 2007

Choose a maize genetic map, maize chromosome and/or chromosome region:



Maize genetic map:
Maize chromosome:
Start cM: End cM:

OR

Choose a maize genetic map, rice chromosome and/or a chromosome region:



Maize genetic map:
Rice chromosome:
Start position (kb): End position (kb):
 
   
 
For Rice Comments/Questions send mail to the TIGR rice team.
 
Photographs courtesy of Robin Buell (TIGR), Jiming Jiang (University of Wisconsin), and the USDA Agricultural Research Service