TIGR Rice - Sorghum Genetic Markers Mapped to Rice Pseudomolecules

Sorghum Genetic Markers Mapped to Rice Pseudomolecules

The sorghum high-density genetic recombination map was downloaded from University of Georgia. The corresponding marker sequences were retrieved from GenBank and used to search Rice Pseudomolecules. Applying a high stringency cutoff of greater than 70% sequence identity and 70% length match or a continuous match of >=150 bp, 447 sorghum markers were mapped onto the TIGR Rice Pseudomolecules, Release 5 and the top 5 alignments (792 in total) are displayed. Syntenic blocks were determined by calculating the colinear order of sorghum markers on sorghum genetic map and on Rice Pseudomolecules.

Search and Browse the Rice-Sorghum Alignment Data
Table view of sorghum markers searched against the Rice Pseudomolecules. Results can be viewed by selecting rice/sorghum chromosomes or by position.
Download Sorghum Marker Searching against Rice Pseudomolecules
Download the alignments of the sorghum markers aligned with the Rice Pseudomolecules in text-delimited format.
Rice-Sorghum Synteny Figure View
Show the synteny figure by rice/sorghum chromosomes derived from alignment of sorghum markers with the TIGR Rice Pseudomolecules, Release 5.

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Photographs courtesy of Robin Buell (TIGR), Jiming Jiang (University of Wisconsin), and the USDA Agricultural Research Service